Glimix-core’s documentation

Date

May 17, 2021

Version

3.1.12

Fast inference for Generalised Linear Mixed Models.

Table of contents

• Install
• Mean functions
  • KronMean
  • LinearMean
  • OffsetMean
  • SumMean
• Covariance functions
  • EyeCov
  • FreeFormCov
  • GivenCov
  • Kron2SumCov
  • LinearCov
  • LRFreeFormCov
  • SumCov
• Likelihoods
  • BernoulliProdLik
  • BinomialProdLik
  • DeltaProdLik
  • PoissonProdLik
• Link functions
  • IdentityLink
  • LogitLink
  • LogLink
  • ProbitLink
• Linear Mixed Models
  • Introduction
  • Multi-Trait
  • Association scan
  • API
    • FastScanner
    • Kron2Sum
    • KronFastScanner
    • LMM
• Generalised Linear Mixed Models
  • Introduction
  • Exponential family likelihood
  • Heterogeneous Normal likelihood
• Gaussian Process
  • Introduction
  • Usage
• Generalised Gaussian Process
  • Introduction
  • Usage
• Random sampler
  • GGPSampler
  • GPSampler

Comments and bugs

You can get the source code and open issues on Github.

References

Min01

Minka, T. P. (2001, August). Expectation propagation for approximate Bayesian inference. In Proceedings of the Seventeenth conference on Uncertainty in artificial intelligence (pp. 362-369). Morgan Kaufmann Publishers Inc..